Our goal is to use Python to create a three-dimensional surface plot of those predictions. The option saving(predictions, replace) saves the predictions to a dataset named predictions.dta. We use margins to estimate the predicted probability of hypertension for all combinations of age and weight for values of age ranging from 20 to 80 years in increments of 5 and for values of weight ranging from 40 to 180 kilograms in increments of 5. Variables that uniquely identify margins: age We can access e(b) and e(V) by typing myeret and myeret, respectively, in Python. 0004335Į(cmdline) : "logistic highbp c.age#c.weight"Į(marginsnotok) : "stdp DBeta DEviance DX2 DDeviance Hat Number Resi." Logistic regression Number of obs = 10,351 We also push Stata's estimation results displayed by ereturn list, including the coefficient vector e(b) and variance–covariance matrix e(V), into a Python dictionary called myeret by specifying the -eret argument. We load the dataframe into Stata by specifying the -d argument of the %%stata magic, and then within Stata, we fit a logistic regression model using age, weight, and their interaction as predictors of the probability of hypertension. The Stata output is displayed underneath the cell. The following commands load the auto dataset and summarize the mpg variable. In a notebook cell, we put Stata commands underneath the %%stata cell magic to direct the cell to call Stata. The stata magic is used to execute Stata commands in an IPython environment. If you get output similar to what is shown above for your edition of Stata, it means that everything is configured properly see Configuration for more ways to configure pystata. Maximum number of variables is set to 5,000 but can be increased More than 2 billion observations are allowed see help obs_advice.ģ. Unicode is supported see help unicode_advice.Ģ. Statistics and Data Science Copyright 1985-2023 StataCorp LLCĩ7 license: 10-user 4-core network perpetualġ. Stata_nfig( "C:/Program Files/Stata18", "mp") Suppose you have Stata installed in C:\Program Files\Stata18\ and you use the Stata/MP edition. Three IPython (interactive Python) magic commands:īefore showing you how to use these tools, we configure the pystata package.In Jupyter Notebook, you can use two set of tools provided by the pystata Python package to interact with Stata: You can invoke Stata and Mata from Jupyter Notebooks with the IPython (interactive Python) kernel, meaning you can combine the capabilities of both Python and Stata in a single environment to make your work easily reproducible and shareable with others. Jupyter notebooks have been widely used by researchers and scientists to share their ideas and results for collaboration and innovation. Jupyter Notebook is a powerful and easy-to-use web application that allows you to combine executable code, visualizations, mathematical equations and formulas, narrative text, and other rich media in a single document (a "notebook") for interactive computing and developing.
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